Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs73924932 chr2:37145046 T/C 1.02E-5 366 20.6 13.2 8.73 KM Plot
LIHC rs73924949 chr2:37171638 C/A 9.29E-6 365 20.6 12.68 8.73 KM Plot
LIHC rs73924952 chr2:37179049 G/C 1.22E-5 366 20.5 12.17 8.73 KM Plot
LIHC rs74061335 chr14:60338809 C/T 2.08E-5 365 19.43 22.4 8.82 KM Plot
LIHC rs74115303 chr13:108911889 G/T 4.83E-5 361 20.7 17.63 6.8 KM Plot
LIHC rs742409 chr16:1499617 T/C 3.78E-7 366 19.17 22.95 1.87 KM Plot
LIHC rs742410 chr16:1499704 T/C 1.81E-7 363 19.37 22.67 1.87 KM Plot
LIHC rs7425023 chr2:169075658 C/T 4.43E-6 367 19.58 21.32 13.87 KM Plot
LIHC rs74340144 chr2:37246815 A/AT 2.85E-5 367 20.33 15.25 8.73 KM Plot
LIHC rs74342135 chr2:37173721 C/T 9.31E-6 367 20.45 12.17 8.73 KM Plot
LIHC rs74354783 chr2:37246172 G/A 2.79E-5 367 20.27 14.9 8.73 KM Plot
LIHC rs74465546 chr2:49663565 C/T 0 362 19.3 20.4 0.75 KM Plot
LIHC rs74480591 chr2:37166321 G/A 1.18E-5 364 20.33 12.17 8.73 KM Plot
LIHC rs74570111 chr2:169081210 A/T 4.25E-6 368 19.6 21.32 13.87 KM Plot
LIHC rs74691885 chr2:37156933 T/C 1.18E-5 365 20.45 11.87 8.73 KM Plot